Ranomics Platform
Wet-lab triage for AI binder-design agents. Yeast display, mammalian display, DMS at library scale.
Sollte ich dies verwenden
Qualität und Sicherheit
Befunde (4)
- HIGH
- MEDIUMin estimate_cost
- MEDIUMin get_experiment_status
- INFOin estimate_cost
Basierend auf einer automatisierten Analyse der Tool-Definitionen und der Einhaltung des Protokolls.
Kontextkosten
Dies ist die ungefähre Anzahl der Tokens, die jedes Mal verbraucht werden, wenn die Tools des Servers in den Kontext eines Modells geladen werden. Höhere Werte verringern die Aufmerksamkeit, die für andere Aufgaben verfügbar ist.
Installieren
Installation mit einem Klick
Fügen Sie dies Ihrer Datei `claude_desktop_config.json` hinzu:
{
"mcpServers": {
"mcp": {
"url": "https://mcp.ranomics.com/mcp"
}
}
}Remote-Endpunkte
https://mcp.ranomics.com/mcpstreamable-httpWas es kann
Tool-Inventar
Tools (7)
🟡list_targets
List the calibrated antigen catalogue. Each entry carries target_id, supported_experiment_types, and typical_campaign_range_usd. Use the target_id on submit_experiment to skip human scoping, or use the custom target shape for a one-off antigen.
Eingabe-Schema
{
"type": "object",
"properties": {}
}🟡estimate_cost(experiment_type, candidate_count, library_diversity, target_kind, target_id)
Non-binding USD cost estimate for a hypothetical submission. Pass target_kind='catalog' + target_id for a calibrated band (requires_human_quote=false), or target_kind='custom' for a placeholder order-of-magnitude band (requires_human_quote=true). Call BEFORE submit_experiment when budgeting matters.
Eingabe-Schema
{
"type": "object",
"properties": {
"experiment_type": {
"type": "string",
"enum": [
"yeast_display",
"mammalian_display",
"dms"
]
},
"candidate_count": {
"type": "integer",
"minimum": 0
},
"library_diversity": {
"type": "integer",
"minimum": 0
},
"target_kind": {
"type": "string",
"enum": [
"catalog",
"custom"
]
},
"target_id": {
"type": "string"
}
},
"required": [
"experiment_type"
]
}🟡submit_experiment(name, webhook_url, experiment_spec, idempotency_key)
Submit a binder panel for wet-lab triage. The experiment_spec mirrors the curl /api/v1/experiments contract: experiment_type (yeast_display/mammalian_display/dms), target (target_id or custom), library_design, and sequences as {user_key: amino_acid_string} (use ':' as a multi-chain separator). Optional webhook_url receives signed POSTs on every status transition. Optional idempotency_key dedupes retries. Returns the created experiment with status WaitingForConfirmation and a status_log. Poll get_experiment_status to track progress, get_experiment_results when status_log shows Done.
Eingabe-Schema
{
"type": "object",
"properties": {
"name": {
"type": "string"
},
"webhook_url": {
"type": "string",
"format": "uri"
},
"experiment_spec": {
"type": "object",
"properties": {
"experiment_type": {
"type": "string",
"enum": [
"yeast_display",
"mammalian_display",
"dms"
]
},
"target": {
"type": "object",
"properties": {
"target_id": {
"type": "string",
"minLength": 1
},
"custom": {
"type": "object",
"properties": {
"name": {
"type": "string",
"minLength": 1
},
"antigen_sequence": {
"type": "string"
},
"notes": {
"type": "string"
}
},
"required": [
"name"
]
}
}
},
"library_design": {
"type": "object",
"properties": {
"mode": {
"type": "string"
},
"diversity_estimate": {
"type": "integer",
"minimum": 0
},
"notes": {
"type": "string"
}
}
},
"sequences": {
"type": "object",
"additionalProperties": {
"type": "string",
"minLength": 1
}
}
},
"required": [
"experiment_type",
"target",
"sequences"
]
},
"idempotency_key": {
"type": "string",
"minLength": 8,
"maxLength": 128
}
},
"required": [
"experiment_spec"
]
}🟢get_experiment_status(experiment_id)
Poll an experiment by id. Returns the current status (Draft/WaitingForConfirmation/QuoteSent/WaitingForMaterials/LibraryConstruction/Sorting/NGS/DataAnalysis/InReview/Done), the orthogonal results_status (none/partial/all), and the status_log. Cheap; safe to poll every few minutes. Webhooks are preferred for production agents.
Eingabe-Schema
{
"type": "object",
"properties": {
"experiment_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"experiment_id"
]
}🟢get_experiment_quote(experiment_id)
Fetch the quote for an experiment once status is QuoteSent. Returns quote_id, total_usd, currency (default USD), line_items, valid_until, and terms_url. If status is QuoteSent but the scoping team has not posted a price yet, total_usd is null and a 'note' field explains it is being finalised; poll again until total_usd populates. Pass the quote_id to confirm_quote to accept.
Eingabe-Schema
{
"type": "object",
"properties": {
"experiment_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"experiment_id"
]
}🟢confirm_quote(quote_id)
Accept a quote. Moves the experiment from QuoteSent to WaitingForMaterials. Call after a human (or budget guard) has approved the total_usd from get_experiment_quote. Returns 409 quote_not_confirmable if status is not QuoteSent, or 409 quote_not_finalized if a price has not been posted yet (total_usd null). Fetch get_experiment_quote and wait for total_usd before confirming.
Eingabe-Schema
{
"type": "object",
"properties": {
"quote_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"quote_id"
]
}🟢get_experiment_results(experiment_id)
Fetch results once results_status is 'partial' or 'all' (check via get_experiment_status first). Returns per-sequence pre/post counts, log2_enrichment, percentile, called_hit booleans, plus signed download URLs for the enrichment table CSV, hits FASTA, and (when opted in) raw FASTQ. Yeast-display result shape; mammalian and DMS use the same envelope.
Eingabe-Schema
{
"type": "object",
"properties": {
"experiment_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"experiment_id"
]
}Community
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