Cytoscape Desktop MCP

Drive a running Cytoscape Desktop to load, lay out, and style biological networks.

Install

One-Click Install

Add this to your `claude_desktop_config.json` file:

{
  "mcpServers": {
    "cytoscape-desktop-mcp-bridge": {
      "command": "npx",
      "args": [
        "@cytoscape/cytoscape-desktop-mcp-bridge"
      ]
    }
  }
}

Runnable packages

npm@cytoscape/cytoscape-desktop-mcp-bridge1.0.3stdio

What it can do

Tool inventory

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Community

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Evidence

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