Ranomics Platform
Wet-lab triage for AI binder-design agents. Yeast display, mammalian display, DMS at library scale.
¿Debería usar esto?
Calidad y seguridad
Hallazgos (4)
- HIGH
- MEDIUMen estimate_cost
- MEDIUMen get_experiment_status
- INFOen estimate_cost
Basado en el análisis automatizado de las definiciones de herramientas y el cumplimiento del protocolo.
Costo de contexto
Este es el número aproximado de tokens que se consumen cada vez que las herramientas del servidor se cargan en el contexto de un modelo. Los recuentos más altos reducen la atención disponible para otras tareas.
Instalar
Instalación con un clic
Agrega esto a tu archivo `claude_desktop_config.json`:
{
"mcpServers": {
"mcp": {
"url": "https://mcp.ranomics.com/mcp"
}
}
}Puntos de conexión remotos
https://mcp.ranomics.com/mcpstreamable-httpQué puede hacer
Inventario de herramientas
Herramientas (7)
🟡list_targets
List the calibrated antigen catalogue. Each entry carries target_id, supported_experiment_types, and typical_campaign_range_usd. Use the target_id on submit_experiment to skip human scoping, or use the custom target shape for a one-off antigen.
Esquema de entrada
{
"type": "object",
"properties": {}
}🟡estimate_cost(experiment_type, candidate_count, library_diversity, target_kind, target_id)
Non-binding USD cost estimate for a hypothetical submission. Pass target_kind='catalog' + target_id for a calibrated band (requires_human_quote=false), or target_kind='custom' for a placeholder order-of-magnitude band (requires_human_quote=true). Call BEFORE submit_experiment when budgeting matters.
Esquema de entrada
{
"type": "object",
"properties": {
"experiment_type": {
"type": "string",
"enum": [
"yeast_display",
"mammalian_display",
"dms"
]
},
"candidate_count": {
"type": "integer",
"minimum": 0
},
"library_diversity": {
"type": "integer",
"minimum": 0
},
"target_kind": {
"type": "string",
"enum": [
"catalog",
"custom"
]
},
"target_id": {
"type": "string"
}
},
"required": [
"experiment_type"
]
}🟡submit_experiment(name, webhook_url, experiment_spec, idempotency_key)
Submit a binder panel for wet-lab triage. The experiment_spec mirrors the curl /api/v1/experiments contract: experiment_type (yeast_display/mammalian_display/dms), target (target_id or custom), library_design, and sequences as {user_key: amino_acid_string} (use ':' as a multi-chain separator). Optional webhook_url receives signed POSTs on every status transition. Optional idempotency_key dedupes retries. Returns the created experiment with status WaitingForConfirmation and a status_log. Poll get_experiment_status to track progress, get_experiment_results when status_log shows Done.
Esquema de entrada
{
"type": "object",
"properties": {
"name": {
"type": "string"
},
"webhook_url": {
"type": "string",
"format": "uri"
},
"experiment_spec": {
"type": "object",
"properties": {
"experiment_type": {
"type": "string",
"enum": [
"yeast_display",
"mammalian_display",
"dms"
]
},
"target": {
"type": "object",
"properties": {
"target_id": {
"type": "string",
"minLength": 1
},
"custom": {
"type": "object",
"properties": {
"name": {
"type": "string",
"minLength": 1
},
"antigen_sequence": {
"type": "string"
},
"notes": {
"type": "string"
}
},
"required": [
"name"
]
}
}
},
"library_design": {
"type": "object",
"properties": {
"mode": {
"type": "string"
},
"diversity_estimate": {
"type": "integer",
"minimum": 0
},
"notes": {
"type": "string"
}
}
},
"sequences": {
"type": "object",
"additionalProperties": {
"type": "string",
"minLength": 1
}
}
},
"required": [
"experiment_type",
"target",
"sequences"
]
},
"idempotency_key": {
"type": "string",
"minLength": 8,
"maxLength": 128
}
},
"required": [
"experiment_spec"
]
}🟢get_experiment_status(experiment_id)
Poll an experiment by id. Returns the current status (Draft/WaitingForConfirmation/QuoteSent/WaitingForMaterials/LibraryConstruction/Sorting/NGS/DataAnalysis/InReview/Done), the orthogonal results_status (none/partial/all), and the status_log. Cheap; safe to poll every few minutes. Webhooks are preferred for production agents.
Esquema de entrada
{
"type": "object",
"properties": {
"experiment_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"experiment_id"
]
}🟢get_experiment_quote(experiment_id)
Fetch the quote for an experiment once status is QuoteSent. Returns quote_id, total_usd, currency (default USD), line_items, valid_until, and terms_url. If status is QuoteSent but the scoping team has not posted a price yet, total_usd is null and a 'note' field explains it is being finalised; poll again until total_usd populates. Pass the quote_id to confirm_quote to accept.
Esquema de entrada
{
"type": "object",
"properties": {
"experiment_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"experiment_id"
]
}🟢confirm_quote(quote_id)
Accept a quote. Moves the experiment from QuoteSent to WaitingForMaterials. Call after a human (or budget guard) has approved the total_usd from get_experiment_quote. Returns 409 quote_not_confirmable if status is not QuoteSent, or 409 quote_not_finalized if a price has not been posted yet (total_usd null). Fetch get_experiment_quote and wait for total_usd before confirming.
Esquema de entrada
{
"type": "object",
"properties": {
"quote_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"quote_id"
]
}🟢get_experiment_results(experiment_id)
Fetch results once results_status is 'partial' or 'all' (check via get_experiment_status first). Returns per-sequence pre/post counts, log2_enrichment, percentile, called_hit booleans, plus signed download URLs for the enrichment table CSV, hits FASTA, and (when opted in) raw FASTQ. Yeast-display result shape; mammalian and DMS use the same envelope.
Esquema de entrada
{
"type": "object",
"properties": {
"experiment_id": {
"type": "string",
"minLength": 1
}
},
"required": [
"experiment_id"
]
}Comunidad
Evidencia